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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 08:55:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gm_ck24178 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.
CD401767.1:596-615
AGTTGGGGTTCTGACCTGAGGGTGTCACAC596CCATCTGCCTGACTTTTGCATCCTTTTGCAAAGAATCTTTAACATTTGGA
TSA: Cajanus cajan cultivar UPAS 120 contig21377.UPAS mRNA sequence.
EZ639094.1:595-614
AGTTGGGGTTCTGACTTGTGGGTGTCACAC595CCATCTGCCTGACTTTTGCATCCCCTTTGCAAAGAATCTTTAGCATTCGG
GT_DBa121C21.F GT_DBa Glycine tomentella genomic 5', genomic survey sequence.
HN643564.1:622-641
AGTTGGGGTTCTTACCTGAGGGTGTCACAC622CCATCTGCCTGACTTTTGCATCCTTTTGCAAAGAATCTTTAACATTTGGA
GS_Ba069C18.R GS_Ba Glycine syndetika genomic 3', genomic survey sequence.
HN776039.1:484-503
AGTTGGGGTTCTGACCTGAGGGTGTCACAC484CCATCTGCCTGACTTTTGCATCCTTTTGCAAAGAATCTTTAACATTTGGA
Medicago truncatula chromosome 8 clone mth2-41c1, complete sequence.
AC174363.7:92061-92080
AGTTGGGATTCTGGCCAGTTGGGGTCACAC92061CCATCTGCCTGACTTTTGCATCCTTCTCCAAAGAATCTTTAGCATTAGCA
Salicornia ramosissima genome assembly, chromosome: 2.
OX596233.1:42577240-42577259
CAGATGATGCTGTGGGTATAACAATTTTAA42577240CCATCTGCCTGACTTTTGCATACAATGCACAGTACAAAAATTTCTTTCCT
Trifolium subterraneum genome assembly, chromosome: 4.
OX637464.1:24206680-24206699
AGTTGGGATTCTGGCCAGTGGGGGTCACAC24206680CCATCTGCCTGACTTTTGCATCCTTCTCCAAAGAATCTTTAGCATTAGCA
Medicago lupulina genome assembly, chromosome: 5.
OY283143.1:22140903-22140922
AGTTTGGATTCTGGCCAGTTGGGGTCACAC22140903CCATCTGCCTGACTTTTGCATCCTTCTCCAAAGAATCTTTAGCATTAGCA
Lathyrus sativus genome assembly, chromosome: 4.
OZ012738.1:396755907-396755926
AATTGGGATTCTGGCCCGTGGGAGTGACAC396755907CCATCTGCCTGACTTTTGCATCCTTCTCCAAAGAATCTTTAGCATTTGCA
Ascidia mentula genome assembly, chromosome: 6.
OX387202.1:16409278-16409297
TTTAAAAACAACAGTGTTTGGTATGACAGG16409278CCATCTGCCTGACTTTTGCATGCTCATGGTAGGTGCTAAAAATCATTTGT
Sequence 74898 from patent US 9029636.
HK983961.1:2874-2893
TCCAAATGTTAAAGATTCTTTGCAAAAGGA2874TGCAAAAGTCAGGCAGATGGGTGTGACACCCTCAGCCACCCAGAATGGGG
Medicago truncatula EST MtBA24F04F1 : T3 end of clone MtBA24F04 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL368460.1:267-286
TGCTAATGCTAAAGATTCTTTGGAGAAGGA267TGCAAAAGTCAGGCAGATGGGTGTGACCCCAACTGGCCAGAATCCCAACT
s13dNF0AH09GS076_460908 Germinating Seed Medicago truncatula cDNA, mRNA sequence.
CX538826.1:126-145
TGCTAATGCTAAAGATTCTTTGGAGAAGGA126TGCAAAAGTCAGGCAGATGGGTGTGACCCCAACTGGCCAGAATCCCAACT
METB091TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY477247.1:653-672
TGCTAATGCTAAAGATTCTTTGGAGAAGGA653TGCAAAAGTCAGGCAGATGGGTGTGACCCCAACTGGCCAGAATCCCAACT
LCUSE1NG_T3_029_C01_14JUN2007_011 LCUSE1NG Lens culinaris cDNA, mRNA sequence.
GT621194.1:303-322
TGCAAATGCTAAAGATTCTTTGGAGAAGGA303TGCAAAAGTCAGGCAGATGGGTGTCACTCCCACAAGCCAGAATCCTAATT
TSA: Cajanus cajan cultivar Asha contig05264.Asha mRNA sequence.
EZ653128.1:1348-1367
TCCGAATGCTAAAGATTCTTTGCAAAGGGA1348TGCAAAAGTCAGGCAGATGGGTGTGACACCCACAAGTCAGAACCCCAACT
TSA: Lens culinaris contig09009.Lecu mRNA sequence.
JI855263.1:503-522
TGCAAATGCTAAAGATTCTTTGGAGAAGGA503TGCAAAAGTCAGGCAGATGGGTGTCACTCCCACAAGCCAGAATCCTAATT
TSA: Medicago sativa cultivar Chilean F0D_9131 mRNA sequence.
JL875558.1:167-186
TGCTAATGCTAAAGATTCTTTGGAGAAGGA167TGCAAAAGTCAGGCAGATGGGTGTGACCCCAACTGGACAGAATCCCAACT
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_5036 mRNA sequence.
JL886232.1:5-24
AGGA5TGCAAAAGTCAGGCAGATGGGTGTGACCCCCAACTGGCCAGAATCCCAAC
MBEME74TF mth2 Medicago truncatula genomic clone 1M3, genomic survey sequence.
CG966795.1:503-522
TGCTAATGCTAAAGATTCTTTGGAGAAGGA503TGCAAAAGTCAGGCAGATGGGTGTGACCCCAACTGGCCAGAATCCCAACT
GD_TBa295D09.R GD_TBa Glycine dolichocarpa genomic 3', genomic survey sequence.
HN498659.1:694-713
TCCAAATGTTAAAGATTCTTTGCAAAAGGA694TGCAAAAGTCAGGCAGATGGGTGTGACACCCTCAGGTCAGAACCCTAACT
GT_DBa134I17.F GT_DBa Glycine tomentella genomic 5', genomic survey sequence.
HN675392.1:746-765
TCCAAATGTTAAAGATTCTTTGCAAAAGGA746TGCAAAAGTCAGGCAGATGGGTGTGACACCCTCAGGTAAGAACCCCAACT
GC_Bc090C18.F GC_Bc Glycine canescens genomic 5', genomic survey sequence.
JS047354.1:701-720
TCCAAATGTTAAAGATTCTTTGCAAAAGGA701TGCAAAAGTCAGGCAGATGGGTGTGACACCCTCA
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:20386758-20386777
TGCTAATGCTAAAGATTCTTTGGAGAAGGA20386758TGCAAAAGTCAGGCAGATGGGTGTGACCCCAACGAGCCAGAATCCCAACT
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:20685317-20685336
TGCTAATGCTAAAGATTCTTTGGAGAAGGA20685317TGCAAAAGTCAGGCAGATGGGTGTGACCCCAACGAGCCAGAATCCCAACT
Glycine max cultivar Williams 82 chromosome 16.
CP126441.1:7705767-7705786
TCCAAATGTTAAAGATTCTTTGCAAAAGGA7705767TGCAAAAGTCAGGCAGATGGGTGTGACACCCTCAGGTCAGAACCCCAACT
Medicago arabica genome assembly, chromosome: 5.
OX326968.1:39674977-39674996
TGCTAATGCTAAAGATTCTTTGGAAAAGGA39674977TGCAAAAGTCAGGCAGATGGGTGTGACCCCCACTGGCCAGAATCCCAACT
Vicia faba genome assembly, chromosome: 4.
OX451739.1:699427968-699427987
TGCAAATGCTAAAGATTCTTTGGAGAAGGA699427968TGCAAAAGTCAGGCAGATGGGTGTCACTCCCACGGGCCAGAATCCCAATT
Astragalus glycyphyllos genome assembly, chromosome: 2.
OY754308.1:38315005-38315024
TCACAATACTAAAGATGCTTTGGAGAAGGA38315005TGCAAAAGTCAGGCAGATGGGTGTGACCCCCTCAGGCCAGAATCCCAACT
Lathyrus aphaca genome assembly, chromosome: 4.
OZ014522.1:390290552-390290571
TGCAAATGCTAAAGATTCTTTGGAGAAGGA390290552TGCAAAAGTCAGGCAGATGGGTGTCACTCCCACGGGCCAGAATCCCAATT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/%20CCATCTGCCTGACTTTTGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : %20CCATCTGCCTGACTTTTGCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.411 | 0.403 | search_plus_done; http://172.18.8.135:50400/match?q=CCATCTGCCTGACTTTTGCA&k=0&no_gap=0&offset=0&limit=50
0.976 | 0.565 | search_minus_done; http://172.18.8.135:50400/match?q=TGCAAAAGTCAGGCAGATGG&k=0&no_gap=0&offset=0&limit=40
0.989 | 0.013 | cgi_end;

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